##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L002_R1_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.692378 34.0 31.0 34.0 31.0 34.0 2 32.94977375 34.0 31.0 34.0 31.0 34.0 3 32.993312 34.0 31.0 34.0 31.0 34.0 4 36.41117475 37.0 37.0 37.0 35.0 37.0 5 36.3370725 37.0 37.0 37.0 35.0 37.0 6 36.31324975 37.0 37.0 37.0 35.0 37.0 7 36.31400575 37.0 37.0 37.0 35.0 37.0 8 36.2992015 37.0 37.0 37.0 35.0 37.0 9 38.08127825 39.0 39.0 39.0 37.0 39.0 10-14 38.3410221 39.4 38.4 39.4 35.8 39.4 15-19 39.4841325 41.0 39.8 41.0 36.6 41.0 20-24 39.1654799 40.8 38.8 41.0 35.8 41.0 25-29 37.96222695 40.0 37.4 41.0 31.8 41.0 30-34 36.45939045000001 39.2 35.4 41.0 27.0 41.0 35-39 36.868512 38.6 35.0 40.4 32.2 41.0 40-44 32.40794760000001 36.2 26.2 39.6 21.4 41.0 45-49 34.2586892 35.0 32.8 38.6 28.2 41.0 50-54 33.807620650000004 35.0 33.6 36.8 26.4 40.4 55-59 32.11508755 35.0 32.0 35.0 20.4 39.0 60-64 33.368538 35.0 33.0 35.0 28.6 37.4 65-69 33.01557425 35.0 33.0 35.0 29.0 36.0 70-74 32.24225075 35.0 33.0 35.0 25.8 35.0 75-79 31.883874100000003 34.6 32.6 35.0 26.2 35.0 80-84 32.07600334999999 35.0 33.0 35.0 26.4 35.0 85-89 31.324206049999997 35.0 32.2 35.0 22.0 35.0 90-94 31.355280800000003 35.0 32.4 35.0 24.0 35.0 95-99 31.02021785 35.0 32.6 35.0 23.4 35.0 100-101 29.698408625 34.0 30.5 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 75.0 3 21.0 4 48.0 5 109.0 6 417.0 7 1208.0 8 2921.0 9 4369.0 10 5495.0 11 6726.0 12 7135.0 13 6666.0 14 6585.0 15 6669.0 16 7303.0 17 7764.0 18 8319.0 19 9137.0 20 10006.0 21 11468.0 22 13859.0 23 17662.0 24 22407.0 25 28816.0 26 35985.0 27 45176.0 28 56635.0 29 71974.0 30 92287.0 31 125046.0 32 188247.0 33 320903.0 34 536644.0 35 771295.0 36 957691.0 37 470451.0 38 128363.0 39 14021.0 40 97.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.168852620519175 21.654645462405878 17.74855838064552 28.427943536429424 2 30.305474999999998 22.372500000000002 22.170125 25.151899999999998 3 27.649225 21.54445 22.767699999999998 28.038625 4 30.16825 20.525 20.86145 28.4453 5 30.753425 20.356375 19.7287 29.1615 6 29.247849999999996 20.110049999999998 19.093125 31.548975000000002 7 31.61955 19.386725 19.5218 29.471925 8 29.214275 19.6264 20.058175 31.10115 9 29.71245 18.962699999999998 20.479125 30.845725 10-14 30.280849999999997 19.58665 19.777434999999997 30.355064999999996 15-19 30.216725 19.62055 19.7554 30.407325 20-24 30.322166657941256 19.667215342481864 19.810817098944504 30.199800900632372 25-29 30.51381462433162 19.606366457298115 19.623956615609544 30.255862302760722 30-34 30.736123312374602 19.629727722344732 19.60675281474184 30.027396150538827 35-39 30.27359467841444 19.76677802982484 19.78673307545813 30.17289421630259 40-44 33.49683402517382 18.92966449627744 18.757256752544077 28.816244726004665 45-49 30.37199 19.658895 19.73348 30.235635 50-54 30.45712418852289 19.744411335469472 19.718376267778297 30.080088208229345 55-59 30.545859257578094 19.855344150997347 19.585858709089315 30.012937882335244 60-64 30.315349967587004 19.661153548584164 19.713802475209672 30.30969400861916 65-69 30.275741927070204 19.763136587547514 19.77542269821192 30.185698787170363 70-74 30.45283 19.760254999999997 19.595185 30.19173 75-79 30.386619999999997 19.728945 19.673795 30.210639999999998 80-84 30.28637131615825 19.755236302423462 19.75534630273696 30.20304607868132 85-89 30.475517194634914 19.738519121409286 19.609845815547395 30.176117868408404 90-94 30.33213662929529 19.633017429471725 19.69639823589922 30.33844770533376 95-99 30.3292330329233 19.7070969707097 19.730976973097697 30.232693023269302 100-101 30.76125 19.590037499999998 19.462075000000002 30.186637500000003 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.596796156948606 2 55.457375 3 55.687850000000005 4 58.613550000000004 5 59.914925 6 60.796825 7 61.091474999999996 8 60.315425 9 60.558175000000006 10-14 60.635915 15-19 60.62405 20-24 60.52196755857363 25-29 60.76967692709234 30-34 60.76351946291343 35-39 60.446488894717035 40-44 62.31307875117849 45-49 60.607625 50-54 60.537212396752224 55-59 60.55879713991333 60-64 60.62504397620616 65-69 60.46144071424057 70-74 60.644560000000006 75-79 60.59726 80-84 60.48941739483957 85-89 60.651635063043315 90-94 60.670584334629055 95-99 60.561926056192604 100-101 60.9478875 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 36.0 1 34.0 2 33.5 3 30.0 4 27.5 5 29.5 6 29.5 7 34.5 8 50.5 9 68.5 10 77.0 11 89.5 12 125.0 13 168.5 14 213.0 15 268.0 16 350.5 17 444.0 18 535.0 19 644.5 20 794.0 21 993.0 22 1275.5 23 1582.0 24 1939.0 25 2466.0 26 2973.0 27 3571.5 28 4420.5 29 5503.5 30 6676.5 31 8019.5 32 9542.5 33 11219.0 34 13312.5 35 15558.0 36 17629.0 37 19731.5 38 22006.0 39 24054.5 40 26066.0 41 28115.0 42 29833.0 43 31673.0 44 33797.0 45 36026.0 46 38498.5 47 41450.0 48 45057.0 49 49525.0 50 54919.5 51 61242.5 52 68415.5 53 76406.5 54 85435.0 55 94981.5 56 104813.0 57 115394.5 58 126289.0 59 137596.0 60 149121.0 61 160782.0 62 170953.5 63 179670.0 64 186891.0 65 190632.5 66 190804.0 67 187419.5 68 179489.0 69 167309.5 70 152067.5 71 134359.5 72 115675.5 73 96498.0 74 77755.5 75 60506.5 76 45344.5 77 32648.5 78 22563.5 79 14886.0 80 9321.0 81 5544.5 82 3154.0 83 1721.0 84 955.0 85 574.5 86 386.5 87 269.0 88 183.0 89 148.5 90 101.5 91 59.0 92 55.0 93 36.5 94 16.5 95 8.0 96 7.5 97 6.5 98 3.5 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01695 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.004705 25-29 9.0E-4 30-34 1.00069 35-39 0.025285 40-44 0.958625 45-49 0.0 50-54 2.6000000000000003E-4 55-59 0.81839 60-64 0.016955 65-69 0.00904 70-74 0.0 75-79 0.0 80-84 2.85E-4 85-89 0.006455 90-94 0.01705 95-99 9.999999999999999E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1334806453064317 #Duplication Level Relative count 1 100.0 2 0.11413582162773701 3 0.0030035742533615004 4 0.0 5 0.0 6 0.0 7 5.005957088935833E-4 8 5.005957088935833E-4 9 0.0 10++ 0.0010011914177871666 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 414155 3.62326 4.125694 95-97 AAAAA 408705 3.5358856 3.9435225 70-74 >>END_MODULE