##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L002_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.85359775 34.0 31.0 34.0 31.0 34.0 2 33.07768475 34.0 33.0 34.0 31.0 34.0 3 33.106995 34.0 33.0 34.0 31.0 34.0 4 36.47641225 37.0 37.0 37.0 35.0 37.0 5 36.4153925 37.0 37.0 37.0 35.0 37.0 6 36.38110975 37.0 37.0 37.0 35.0 37.0 7 36.37473975 37.0 37.0 37.0 35.0 37.0 8 36.36294225 37.0 37.0 37.0 35.0 37.0 9 38.1547785 39.0 39.0 39.0 37.0 39.0 10-14 38.426328 39.4 39.0 39.4 37.0 39.4 15-19 39.567803 41.0 40.0 41.0 37.0 41.0 20-24 39.355499699999996 41.0 39.2 41.0 36.2 41.0 25-29 38.91739460000001 40.0 38.4 41.0 35.2 41.0 30-34 38.209874150000005 40.0 37.4 41.0 34.0 41.0 35-39 37.239606300000005 38.8 35.2 40.6 32.8 41.0 40-44 36.41817605 37.2 35.0 40.0 32.4 41.0 45-49 35.822783099999995 35.2 35.0 39.4 32.8 41.0 50-54 34.98590695 35.0 35.0 37.6 31.6 40.6 55-59 34.3306793 35.0 34.4 35.4 31.0 39.4 60-64 33.820670899999996 35.0 34.0 35.0 30.6 37.6 65-69 33.399647 35.0 33.6 35.0 29.8 36.2 70-74 33.07967935 35.0 33.0 35.0 29.0 35.2 75-79 32.3862981 34.4 32.6 35.0 28.0 35.0 80-84 32.64808910000001 35.0 33.0 35.0 29.0 35.0 85-89 32.3223621 35.0 33.0 35.0 27.4 35.0 90-94 31.92596585 35.0 33.0 35.0 27.0 35.0 95-99 31.38928445 35.0 33.0 35.0 24.6 35.0 100-101 30.1000775 34.0 31.0 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 45.0 3 14.0 4 44.0 5 119.0 6 340.0 7 850.0 8 1962.0 9 2880.0 10 3708.0 11 4313.0 12 4368.0 13 4608.0 14 4992.0 15 5254.0 16 5790.0 17 6518.0 18 7112.0 19 7679.0 20 8326.0 21 9415.0 22 11049.0 23 13948.0 24 16858.0 25 21506.0 26 27139.0 27 34435.0 28 42687.0 29 53231.0 30 67062.0 31 85940.0 32 113650.0 33 159694.0 34 263339.0 35 657323.0 36 1371577.0 37 747403.0 38 210616.0 39 24073.0 40 133.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.176823445841386 21.627740035059848 17.69857182755516 28.496864691543607 2 30.2979 22.338975 22.104025 25.2591 3 27.6738 21.482875 22.73835 28.104975 4 30.190675 20.497975 20.818025000000002 28.493325000000002 5 30.814075000000003 20.336375 19.6949 29.15465 6 29.28715 20.000525 19.127875 31.584449999999997 7 31.65095 19.307725 19.454475 29.58685 8 29.236375 19.62865 19.980325 31.15465 9 29.8035 18.93245 20.441125 30.822925 10-14 30.30851530851531 19.590044590044588 19.735479735479736 30.365960365960365 15-19 30.249955 19.602339999999998 19.723685 30.424020000000002 20-24 30.153100553585194 19.68375688931491 19.83905694366993 30.324085613429965 25-29 30.332734141201 19.68594165252023 19.70046226964646 30.28086193663231 30-34 30.27309148421386 19.63776313920602 19.717945699491654 30.371199677088466 35-39 30.239473943468624 19.704430763045018 19.804029039328714 30.25206625415764 40-44 30.359534953652417 19.66384796607099 19.65850287012652 30.31811421015007 45-49 30.280325 19.620124999999998 19.712655 30.386895000000003 50-54 30.222943579653304 19.70013122034117 19.788976451338776 30.28794874866675 55-59 30.38134 19.657275 19.64911 30.312275 60-64 30.297598363392552 19.616298095899417 19.711649164881678 30.37445437582635 65-69 30.23550175841973 19.73757316621031 19.756058367021563 30.270866708348393 70-74 30.383905 19.684045 19.639200000000002 30.292849999999998 75-79 30.31417 19.63307 19.68046 30.372300000000003 80-84 30.274955948935116 19.70952073531464 19.753903067606203 30.261620248144038 85-89 30.42756040410886 19.664411865330454 19.617406761583403 30.290620968977283 90-94 30.36074695392637 19.603453959132917 19.669294867530375 30.366504219410338 95-99 30.34155015204104 19.689941188327918 19.725670545523027 30.242838114108018 100-101 30.70524444846671 19.591090246424116 19.427063339611323 30.27660196549785 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.67368813738499 2 55.557 3 55.778775 4 58.684000000000005 5 59.968725 6 60.8716 7 61.2378 8 60.391025 9 60.626425 10-14 60.67447567447567 15-19 60.673975 20-24 60.47718616701516 25-29 60.61359607783331 30-34 60.64429116130232 35-39 60.49154019762626 40-44 60.67764916380249 45-49 60.66722 50-54 60.510892328320054 55-59 60.693615 60-64 60.672052739218906 65-69 60.50636846676812 70-74 60.67675500000001 75-79 60.68647 80-84 60.536576197079164 85-89 60.718181373086146 90-94 60.727251173336704 95-99 60.584388266149055 100-101 60.98184641396456 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 66.0 1 46.0 2 28.0 3 25.5 4 24.0 5 32.0 6 34.0 7 37.5 8 52.0 9 64.0 10 86.0 11 105.5 12 132.0 13 191.0 14 234.5 15 280.5 16 356.0 17 428.0 18 559.0 19 718.0 20 871.0 21 1067.5 22 1333.5 23 1617.5 24 1982.0 25 2519.0 26 3124.5 27 3822.0 28 4701.5 29 5656.5 30 6763.0 31 8201.0 32 9939.0 33 11691.5 34 13511.0 35 15646.0 36 17795.0 37 20016.0 38 22240.5 39 24120.0 40 25992.0 41 27968.5 42 29765.5 43 31697.5 44 33638.5 45 35721.0 46 38265.5 47 41459.5 48 45140.5 49 49288.5 50 54524.0 51 60949.0 52 68311.5 53 76193.0 54 84874.0 55 94169.5 56 104077.0 57 114608.0 58 125732.5 59 136740.0 60 147406.0 61 158586.5 62 169275.5 63 178291.5 64 185159.0 65 189490.5 66 190187.0 67 186716.5 68 179528.5 69 168178.0 70 152871.5 71 135349.5 72 116816.5 73 97976.0 74 79514.5 75 62218.0 76 46924.5 77 33876.0 78 23428.5 79 15593.5 80 9838.0 81 5844.5 82 3264.5 83 1775.5 84 987.5 85 560.5 86 352.5 87 236.5 88 173.5 89 125.0 90 88.5 91 70.5 92 42.5 93 21.5 94 14.5 95 7.5 96 5.5 97 3.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.013825 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 9.999999999999999E-5 15-19 0.0 20-24 3.5E-5 25-29 0.00425 30-34 0.059315 35-39 0.018349999999999998 40-44 0.001795 45-49 0.0 50-54 2.6000000000000003E-4 55-59 0.0 60-64 0.027339999999999996 65-69 0.028134999999999997 70-74 0.0 75-79 0.0 80-84 0.005254999999999999 85-89 0.021495 90-94 0.03935 95-99 0.012195 100-101 0.0011625 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.5613231831972837 #Duplication Level Relative count 1 100.0 2 0.5252840052277068 3 0.002513320599175631 4 0.0020106564793405048 5 5.026641198351262E-4 6 5.026641198351262E-4 7 0.0 8 0.0010053282396702524 9 0.0 10++ 0.0010053282396702524 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 417025 3.5788107 3.8649764 90-94 AAAAA 413345 3.5585952 3.7998223 65-69 >>END_MODULE