FastQCFastQC Report
Fri 5 Oct 2012
002002_Airport_GTGGCC_R2_filtered.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename 002002_Airport_GTGGCC_R2_filtered.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 105921087
Filtered Sequences 0
Sequence length 30-101
%GC 62

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GATCG 33511340 3.0848622 4.2110744 1
CGATC 33269185 3.0723803 3.5277717 1
TTTTT 7074750 3.0503764 3.3348064 10-14
AAAAA 7186480 3.0381188 3.5762198 1