##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_R1_filtered.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 105921087 Filtered Sequences 0 Sequence length 30-101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.777821011221306 34.0 31.0 34.0 31.0 34.0 2 32.99345981976186 34.0 31.0 34.0 31.0 34.0 3 33.030657691418895 34.0 31.0 34.0 31.0 34.0 4 36.433279418667595 37.0 37.0 37.0 35.0 37.0 5 36.36736684924693 37.0 37.0 37.0 35.0 37.0 6 36.335622764143274 37.0 37.0 37.0 35.0 37.0 7 36.33066046612607 37.0 37.0 37.0 35.0 37.0 8 36.311281246575575 37.0 37.0 37.0 35.0 37.0 9 38.10254126262885 39.0 39.0 39.0 37.0 39.0 10-14 38.3415838510041 39.4 38.4 39.4 36.2 39.4 15-19 39.48052364304003 41.0 39.6 41.0 37.0 41.0 20-24 39.19243486804474 40.6 39.0 41.0 35.8 41.0 25-29 37.497380473446235 40.0 37.0 41.0 28.4 41.0 30-34 36.968183928351195 39.2 35.6 41.0 30.8 41.0 35-39 36.73710860765682 38.2 35.0 40.2 31.4 41.0 40-44 34.949573117571916 36.0 34.4 39.6 26.2 41.0 45-49 35.04432777633459 35.0 34.6 38.4 30.0 40.8 50-54 34.39269221958218 35.0 34.4 36.0 30.2 39.6 55-59 33.74593750592315 35.0 33.6 35.0 29.4 37.6 60-64 33.67254177432825 35.0 33.2 35.0 30.0 36.0 65-69 33.445780941491 35.0 33.0 35.0 29.4 35.0 70-74 33.07815711281644 35.0 33.0 35.0 29.0 35.0 75-79 32.76840709109168 34.4 32.6 35.0 28.2 35.0 80-84 33.11879807268881 35.0 33.0 35.0 29.0 35.0 85-89 32.96422445089098 35.0 33.0 35.0 28.2 35.0 90-94 32.99375143909737 35.0 33.0 35.0 29.0 35.0 95-99 33.08745388463451 35.0 33.0 35.0 29.0 35.0 100-101 32.697274013750814 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 26.0 20 285.0 21 3699.0 22 26030.0 23 101962.0 24 263744.0 25 516988.0 26 846920.0 27 1215747.0 28 1623845.0 29 2071338.0 30 2625173.0 31 3425815.0 32 4783117.0 33 7216449.0 34 1.1421604E7 35 2.0577824E7 36 3.2056135E7 37 1.4187749E7 38 2626780.0 39 329039.0 40 817.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.61000168927647 19.11023533963544 18.000811302097002 28.278951668991088 2 31.43984244034945 22.40486301176064 20.46155575889573 25.69373878899418 3 29.2023694659542 20.53321339246503 20.970950608577144 29.29346653300363 4 31.27265259962546 19.425460653879746 19.49043545313262 29.811451293362172 5 31.42506930654894 19.211167083283424 19.369674708870765 29.994088901296866 6 30.800638403569252 18.580235114090172 18.093995768755658 32.525130713584915 7 32.6188334906344 18.51549446428925 18.45517880684136 30.410493238234988 8 30.286584011359324 19.038326145576658 19.22275684349803 31.45233299956599 9 30.881355097875833 18.09290344612872 19.025699764580402 32.00004169141504 10-14 31.093560762627355 18.897664115580742 18.946014661846636 31.06276045994527 15-19 31.166987728328284 18.643659984212547 18.798363835512927 31.39098845194624 20-24 31.17089123989342 18.696832183187446 18.817700277564175 31.314576299354957 25-29 32.0940534052799 18.595457785152917 18.52882062383124 30.78166818573594 30-34 31.725222500216532 18.63101648649554 18.5342588104352 31.109502202852727 35-39 31.339765444034512 18.715610678965003 18.724521213229515 31.22010266377097 40-44 32.11575386005619 18.59511920655919 18.473897339132293 30.81522959425233 45-49 31.43322326189849 18.64708392995347 18.61636172421699 31.303331083931045 50-54 31.34321607444604 18.748042716606996 18.716809698161693 31.191931510785274 55-59 31.36035474026921 18.80011624861765 18.6957887453357 31.143740265777435 60-64 31.36927928173232 18.639007612158903 18.627752597887 31.363960508221776 65-69 31.226616233923888 18.757487274095666 18.758404164687626 31.25749232729282 70-74 31.325861078287108 18.8249371875078 18.722388065425264 31.126813668779825 75-79 31.3263595765439 18.68993529479228 18.672455214811826 31.31124991385199 80-84 31.16427337436355 18.775882225234756 18.80951683288576 31.250327567515935 85-89 31.232703743488354 18.852259574694617 18.783883139523514 31.131153542293514 90-94 31.212260139825005 18.71833102019623 18.752934540780657 31.31647429919811 95-99 31.01483146224462 18.81819439025135 18.912172340845103 31.25480180665893 100-101 31.586842277990367 18.608099995828574 18.642805149984103 31.16225257619696 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.88895335826755 2 57.13358122934363 3 58.49583599895782 4 61.08410389298763 5 61.41915820784581 6 63.325769117154174 7 63.02932672886939 8 61.738917010925306 9 62.881396789290875 10-14 62.15632122257262 15-19 62.55797618027452 20-24 62.485467539248376 25-29 62.87572159101585 30-34 62.834724703069256 35-39 62.559868107805485 40-44 62.93098345430852 45-49 62.736554345829546 50-54 62.53514758523131 55-59 62.50409500604665 60-64 62.7332397899541 65-69 62.484108561216715 70-74 62.452674747066936 75-79 62.637609490395896 80-84 62.414600941879485 85-89 62.363857285781876 90-94 62.52873443902311 95-99 62.26963326890355 100-101 62.74909485418733 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 253.0 1 235.0 2 218.5 3 247.0 4 291.0 5 314.5 6 356.0 7 445.0 8 560.0 9 712.0 10 946.0 11 1253.0 12 1599.0 13 2026.5 14 2628.0 15 3352.0 16 4231.5 17 5335.0 18 6718.5 19 8436.0 20 10655.0 21 13380.5 22 16765.0 23 21127.5 24 26780.5 25 33889.0 26 42256.0 27 52288.0 28 64576.0 29 78993.0 30 95499.5 31 113787.5 32 134181.5 33 156970.5 34 180431.0 35 203473.0 36 227172.0 37 251301.5 38 274215.0 39 297015.5 40 321018.5 41 348220.5 42 380348.0 43 418451.5 44 467452.5 45 530602.0 46 610906.5 47 714250.0 48 842638.0 49 997982.0 50 1181194.0 51 1391895.5 52 1628840.0 53 1888732.5 54 2168389.0 55 2460679.5 56 2762998.5 57 3074433.5 58 3393601.5 59 3723672.0 60 4060849.5 61 4401033.0 62 4734629.0 63 5044319.5 64 5314584.5 65 5523982.0 66 5651160.5 67 5668302.5 68 5561403.5 69 5332956.5 70 4981735.5 71 4522491.5 72 3974144.5 73 3368957.5 74 2744479.0 75 2139131.5 76 1585908.0 77 1107004.0 78 723932.0 79 443710.5 80 258005.0 81 144583.5 82 79711.0 83 44362.5 84 26487.5 85 16532.0 86 10149.0 87 6708.0 88 4525.0 89 2710.5 90 1644.0 91 1142.5 92 737.0 93 406.5 94 282.0 95 180.5 96 87.0 97 59.0 98 43.0 99 22.0 100 13.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.664594435289358E-5 3 3.7763962901929052E-6 4 1.9826080523512753E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 4.720495362741132E-5 15-19 5.664594435289358E-7 20-24 0.001561728685809276 25-29 0.20600713812538576 30-34 0.25852156436632523 35-39 0.018599593090657614 40-44 0.3390664065440721 45-49 5.706310585480609E-7 50-54 7.085449151541108E-4 55-59 0.1040476348888066 60-64 0.012343025835580463 65-69 0.011869850404815063 70-74 5.7987776153591714E-5 75-79 0.0 80-84 3.798124395221637E-4 85-89 0.0017786519046033566 90-94 0.006650758853853818 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 30-31 82230.0 32-33 83419.0 34-35 85726.0 36-37 92566.0 38-39 99641.0 40-41 97355.0 42-43 102336.0 44-45 83770.0 46-47 92003.0 48-49 100706.0 50-51 108304.0 52-53 114682.0 54-55 116423.0 56-57 121407.0 58-59 128182.0 60-61 134146.0 62-63 137527.0 64-65 149431.0 66-67 164445.0 68-69 176430.0 70-71 178314.0 72-73 187649.0 74-75 214243.0 76-77 142616.0 78-79 202241.0 80-81 243010.0 82-83 285818.0 84-85 321214.0 86-87 396532.0 88-89 417267.0 90-91 520336.0 92-93 673591.0 94-95 899545.0 96-97 1405054.0 98-99 1968832.0 100-101 9.5594096E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 2.5356957165140277 #Duplication Level Relative count 1 100.0 2 2.4888177602691943 3 0.0276991259386926 4 0.005129467766424556 5 0.011797775862776479 6 0.010258935532849112 7 0.0092330419795642 8 0.008207148426279289 9 0.007694201649636833 10++ 0.020517871065698225 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position GATCG 33032670 3.0458472 4.2279677 1 CGATC 32621260 3.037735 3.4919808 1 TTTTT 7076530 3.027597 3.3834193 10-14 >>END_MODULE