##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_L003_R2_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5319015 34.0 31.0 34.0 31.0 34.0 2 32.67974275 34.0 31.0 34.0 31.0 34.0 3 32.7190585 34.0 31.0 34.0 31.0 34.0 4 36.14923725 37.0 37.0 37.0 35.0 37.0 5 36.13625325 37.0 37.0 37.0 35.0 37.0 6 36.13532675 37.0 37.0 37.0 35.0 37.0 7 36.13975 37.0 37.0 37.0 35.0 37.0 8 36.113838 37.0 37.0 37.0 35.0 37.0 9 37.8586575 39.0 38.0 39.0 35.0 39.0 10-14 38.124787600000005 39.4 38.4 39.4 35.2 39.4 15-19 39.26175655 41.0 39.2 41.0 36.0 41.0 20-24 39.03883449999999 41.0 39.0 41.0 35.6 41.0 25-29 38.61474305 40.0 38.2 41.0 34.8 41.0 30-34 37.90016065 40.0 37.0 41.0 33.4 41.0 35-39 36.8517332 38.6 35.0 40.6 32.4 41.0 40-44 35.89542935 36.4 35.0 39.8 31.0 41.0 45-49 34.933082899999995 35.0 34.8 38.4 30.6 40.8 50-54 33.59819565 34.8 33.2 35.4 28.4 39.2 55-59 33.78238225 35.0 34.0 35.0 30.0 38.0 60-64 33.443822 35.0 34.0 35.0 30.0 36.2 65-69 33.110491100000004 35.0 34.0 35.0 29.2 35.0 70-74 32.85654035 35.0 33.2 35.0 29.0 35.0 75-79 32.631450900000004 35.0 33.0 35.0 28.4 35.0 80-84 32.3166836 35.0 33.0 35.0 27.0 35.0 85-89 31.9954019 35.0 33.0 35.0 26.6 35.0 90-94 31.5858524 35.0 33.0 35.0 24.4 35.0 95-99 31.0198308 35.0 32.6 35.0 23.0 35.0 100-101 29.802150625000003 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6088.0 3 1062.0 4 1635.0 5 2009.0 6 2758.0 7 3317.0 8 4091.0 9 4615.0 10 4959.0 11 5212.0 12 5206.0 13 5415.0 14 5454.0 15 5613.0 16 6004.0 17 6555.0 18 7521.0 19 8527.0 20 9991.0 21 11833.0 22 14262.0 23 17298.0 24 20855.0 25 25497.0 26 31039.0 27 37981.0 28 47231.0 29 57809.0 30 72783.0 31 92720.0 32 121991.0 33 172757.0 34 281964.0 35 680174.0 36 1388849.0 37 684386.0 38 126140.0 39 18296.0 40 103.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.41031014228809 19.02504396598462 17.558685140473386 29.0059607512539 2 32.1217295923131 22.679215500157323 19.528840514519192 25.670214393010383 3 29.797412170388643 20.369320912498797 20.16031006696357 29.672956850148985 4 31.750586687597863 18.920199473783274 18.77177552091051 30.557438317708353 5 31.671394624518395 19.095610694903442 19.156750885631805 30.07624379494636 6 31.002636706751513 18.430973059147863 17.80518998576924 32.761200248331384 7 32.84875813058029 18.262776751301534 18.283873528449742 30.604591589668434 8 30.41720771214803 18.963215416084942 19.097171893622885 31.52240497814414 9 31.018698182659428 17.962017767304495 18.856517073527357 32.16276697650872 10-14 31.198792837658246 18.827430674342615 18.8019978712914 31.17177861670774 15-19 31.252343697224592 18.602713609831646 18.72337242205815 31.421570270885613 20-24 31.19418373258016 18.656867835843073 18.78087397086764 31.368074460709128 25-29 31.305515615169405 18.76546663419077 18.700489824793728 31.2285279258461 30-34 31.38223528024817 18.61300106221557 18.59839484756396 31.406368809972296 35-39 31.24536723700001 18.705944509348218 18.706334715747893 31.342353537903872 40-44 31.38317562458083 18.70471636757714 18.628155677637633 31.2839523302044 45-49 31.43566175063906 18.557343599555324 18.545114841046395 31.461879808759225 50-54 31.289933113660357 18.66347575260138 18.675536223230857 31.371054910507407 55-59 31.37923883677657 18.71326888320399 18.632500315361543 31.2749919646579 60-64 31.453310000000002 18.589365 18.521235 31.43609 65-69 31.303245 18.6869 18.648365 31.361489999999996 70-74 31.408485000000002 18.71822 18.603125000000002 31.270170000000004 75-79 31.452495325893864 18.58842419757657 18.52541108157798 31.43366939495158 80-84 31.328273013249785 18.679258058421713 18.65440952247505 31.338059405853453 85-89 31.422898547318827 18.71513453932179 18.59228901722832 31.26967789613106 90-94 31.4927905826974 18.57764958635901 18.514389434534642 31.415170396408953 95-99 31.359894022997253 18.671121111738444 18.636863201528968 31.332121663735336 100-101 31.56240366255435 18.77239122885139 18.532330502976162 31.132874605618095 >>END_MODULE >>Per base GC content pass #Base %GC 1 63.41627089354199 2 57.79194398532348 3 59.470369020537625 4 62.30802500530622 5 61.74763841946476 6 63.763836955082894 7 63.45334972024873 8 61.93961269029218 9 63.18146515916815 10-14 62.37057145436599 15-19 62.673913968110206 20-24 62.56225819328929 25-29 62.53404354101551 30-34 62.78860409022047 35-39 62.587720774903886 40-44 62.66712795478523 45-49 62.897541559398285 50-54 62.660988024167764 55-59 62.654230801434466 60-64 62.889399999999995 65-69 62.66473500000001 70-74 62.678655000000006 75-79 62.88616472084545 80-84 62.66633241910324 85-89 62.69257644344989 90-94 62.90796097910635 95-99 62.69201568673258 100-101 62.69527826817245 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 47.0 1 31.5 2 18.0 3 16.0 4 17.0 5 25.0 6 28.5 7 25.0 8 25.5 9 45.5 10 61.5 11 70.0 12 93.5 13 130.5 14 166.5 15 199.0 16 253.5 17 329.0 18 402.5 19 443.0 20 543.5 21 678.0 22 767.5 23 909.0 24 1110.5 25 1403.5 26 1775.5 27 2177.5 28 2608.0 29 3123.0 30 3769.0 31 4476.5 32 5250.5 33 6091.0 34 6858.0 35 7641.0 36 8598.0 37 9520.5 38 10201.0 39 10964.0 40 11924.5 41 12835.5 42 13952.5 43 15384.5 44 17085.5 45 19404.5 46 22367.5 47 26081.5 48 30782.0 49 36466.0 50 43081.5 51 50516.0 52 59038.5 53 68423.5 54 78184.0 55 88621.0 56 99573.5 57 110737.0 58 122634.0 59 134513.0 60 146130.5 61 158249.0 62 171017.0 63 182919.5 64 192761.5 65 200727.0 66 205851.5 67 207360.5 68 204407.0 69 196522.5 70 184484.0 71 168634.5 72 148880.5 73 126570.5 74 103550.5 75 81287.5 76 60561.0 77 42295.0 78 27502.0 79 16603.0 80 9360.5 81 4911.5 82 2565.0 83 1430.0 84 853.0 85 543.5 86 370.5 87 274.5 88 212.5 89 159.5 90 119.0 91 98.5 92 80.0 93 64.0 94 52.5 95 32.5 96 23.5 97 24.0 98 17.5 99 9.5 100 5.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.12165 2 0.126175 3 0.1248 4 0.11720000000000001 5 0.106625 6 0.093175 7 0.103225 8 0.135475 9 0.14805000000000001 10-14 0.08966 15-19 0.07775 20-24 0.0493 25-29 0.04895499999999999 30-34 0.07678 35-39 0.052895000000000005 40-44 0.033555 45-49 0.030735000000000002 50-54 0.045360000000000004 55-59 0.03537 60-64 0.0 65-69 0.0 70-74 0.0 75-79 0.004945000000000001 80-84 0.01423 85-89 4.25E-4 90-94 2.3999999999999998E-4 95-99 0.008495 100-101 0.009675 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.22438219934535444 #Duplication Level Relative count 1 100.0 2 0.16277998156829748 3 0.0030051688904916456 4 0.0010017229634972152 5 5.008614817486076E-4 6 0.0 7 0.0 8 5.008614817486076E-4 9 0.0 10++ 0.004507753335737469 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 303300 3.3941016 3.9446602 60-64 TTTTT 287615 3.2876418 3.5229208 95-97 GATCG 1282830 3.0786216 4.2377734 1 CGATC 1273620 3.0700746 3.6399624 1 >>END_MODULE