FastQCFastQC Report
Thu 4 Oct 2012
002002_Airport_GTGGCC_L003_R2_006.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002002_Airport_GTGGCC_L003_R2_006.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 62

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 291815 3.2730918 3.74463 1
TTTTT 276145 3.1671534 3.5367348 10-14
GATCG 1281465 3.0774035 4.3117075 1
CGATC 1274580 3.0721207 3.5146778 1