##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_L003_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60635275 34.0 31.0 34.0 31.0 34.0 2 32.78521125 34.0 31.0 34.0 31.0 34.0 3 32.812465 34.0 31.0 34.0 31.0 34.0 4 36.2197515 37.0 37.0 37.0 35.0 37.0 5 36.23393425 37.0 37.0 37.0 35.0 37.0 6 36.169536 37.0 37.0 37.0 35.0 37.0 7 36.1748405 37.0 37.0 37.0 35.0 37.0 8 36.13775325 37.0 37.0 37.0 35.0 37.0 9 37.885972 39.0 39.0 39.0 35.0 39.0 10-14 38.191769650000005 39.4 38.8 39.4 35.4 39.4 15-19 39.3700328 41.0 40.0 41.0 36.6 41.0 20-24 39.15001035 41.0 39.0 41.0 35.8 41.0 25-29 38.741338850000005 40.2 38.4 41.0 35.0 41.0 30-34 38.0256158 40.0 37.0 41.0 33.6 41.0 35-39 37.0297872 38.6 35.0 40.8 32.8 41.0 40-44 36.05384395 36.4 35.0 39.8 31.8 41.0 45-49 35.07959950000001 35.0 35.0 38.4 31.0 40.8 50-54 33.743553000000006 34.8 33.2 35.4 28.8 39.2 55-59 33.9607979 35.0 35.0 35.0 31.0 38.0 60-64 33.61860134999999 35.0 34.6 35.0 30.6 36.2 65-69 33.32132915 35.0 34.0 35.0 30.0 35.0 70-74 33.07542765 35.0 34.0 35.0 29.2 35.0 75-79 32.82877395 35.0 33.4 35.0 29.0 35.0 80-84 32.53536655 35.0 33.0 35.0 27.8 35.0 85-89 32.231614750000006 35.0 33.0 35.0 27.0 35.0 90-94 31.8375179 35.0 33.0 35.0 26.2 35.0 95-99 31.2792621 35.0 33.0 35.0 24.0 35.0 100-101 30.176723250000002 34.0 31.5 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 5880.0 3 911.0 4 1299.0 5 1619.0 6 2138.0 7 2779.0 8 3337.0 9 3829.0 10 4145.0 11 4494.0 12 4516.0 13 4622.0 14 4692.0 15 4712.0 16 5275.0 17 5732.0 18 6744.0 19 7669.0 20 9028.0 21 10681.0 22 12914.0 23 15729.0 24 19461.0 25 23469.0 26 28674.0 27 35309.0 28 43832.0 29 54208.0 30 68366.0 31 87844.0 32 115936.0 33 165272.0 34 271684.0 35 667251.0 36 1427438.0 37 718364.0 38 131080.0 39 18983.0 40 84.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.43168305134762 18.975260162135633 17.596063571744477 28.99699321477227 2 32.12593011960119 22.681871639679866 19.48305827002445 25.709139970694494 3 29.796197184895295 20.392637895632568 20.12855142895091 29.682613490521227 4 31.74497728692706 18.94787023359374 18.800701726653756 30.506450752825444 5 31.701614149965906 19.100682873039847 19.141733303781695 30.05596967321256 6 30.992277659613904 18.408684927911132 17.79474484117005 32.80429257130491 7 32.90078793017719 18.241704564383955 18.24516138728816 30.6123461181507 8 30.369320637975562 18.954174168981577 19.057170458859748 31.619334734183113 9 31.080913528771266 17.966765515308346 18.779455146019874 32.17286580990051 10-14 31.21511453938063 18.80361653086161 18.77917076953785 31.202098160219915 15-19 31.270742411833897 18.58032205463882 18.705183104686622 31.44375242884066 20-24 31.213633454544727 18.62631646631843 18.758900080412843 31.401149998724005 25-29 31.297945494877734 18.75772277476893 18.691755387424188 31.25257634292915 30-34 31.38889364408489 18.578080268309183 18.597866889149774 31.43515919845615 35-39 31.26973402015253 18.675820920730335 18.696622405229927 31.35782265388721 40-44 31.400786567684097 18.691401838005714 18.606241360150637 31.301570234159552 45-49 31.455475427442607 18.53749946167493 18.543821811376198 31.463203299506258 50-54 31.331935945771345 18.652552441932013 18.643882348685736 31.371629263610906 55-59 31.40148375173966 18.685014063399976 18.61957532414666 31.2939268607137 60-64 31.44674257869703 18.56597742639097 18.540417416166967 31.446862578745034 65-69 31.323709095669095 18.65850839632878 18.625688381559772 31.392094126442355 70-74 31.41115 18.694545 18.59378 31.300525 75-79 31.445156361098082 18.56498403437734 18.545473273457667 31.44438633106691 80-84 31.328303779767268 18.67351422154659 18.64668182251256 31.35150017617358 85-89 31.415578561683922 18.716974037730527 18.598778949084213 31.26866845150134 90-94 31.490505000000002 18.582265 18.50339 31.42384 95-99 31.3585837756267 18.662852768950362 18.6400408044576 31.338522650965338 100-101 31.55871276638966 18.77823441352864 18.542352010950925 31.12070080913077 >>END_MODULE >>Per base GC content pass #Base %GC 1 63.428676266119886 2 57.83507009029568 3 59.478810675416526 4 62.25142803975251 5 61.757583823178464 6 63.79657023091882 7 63.51313404832789 8 61.988655372158675 9 63.25377933867178 10-14 62.41721269960054 15-19 62.71449484067456 20-24 62.61478345326873 25-29 62.55052183780688 30-34 62.82405284254104 35-39 62.62755667403974 40-44 62.70235680184365 45-49 62.918678726948876 50-54 62.70356520938225 55-59 62.69541061245336 60-64 62.89360515744207 65-69 62.715803222111454 70-74 62.711675 75-79 62.88954269216499 80-84 62.67980395594085 85-89 62.68424701318526 90-94 62.914345000000004 95-99 62.69710642659204 100-101 62.679413575520435 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2.0 1 5.5 2 7.5 3 9.0 4 12.5 5 15.0 6 17.0 7 19.0 8 24.0 9 30.0 10 43.5 11 64.5 12 77.5 13 100.5 14 128.5 15 181.5 16 254.0 17 301.5 18 392.0 19 468.0 20 543.0 21 672.0 22 811.5 23 972.0 24 1190.0 25 1453.5 26 1776.5 27 2175.0 28 2556.5 29 3102.5 30 3731.0 31 4367.5 32 5205.5 33 6063.5 34 6823.5 35 7668.5 36 8491.5 37 9256.5 38 10124.0 39 10966.5 40 11860.0 41 12810.0 42 13864.5 43 15233.0 44 17014.5 45 19283.0 46 22118.0 47 25825.5 48 30482.0 49 36188.0 50 42912.5 51 50629.0 52 59261.5 53 68286.5 54 78142.5 55 88647.0 56 99199.5 57 110429.0 58 121805.5 59 133553.5 60 145965.0 61 158377.5 62 171117.5 63 182900.5 64 193193.5 65 201246.5 66 206584.0 67 208118.5 68 204472.0 69 196728.5 70 185255.0 71 169444.5 72 149613.0 73 127284.0 74 104006.0 75 81370.5 76 60504.5 77 42421.0 78 27500.5 79 16408.0 80 9191.5 81 4815.5 82 2415.0 83 1222.5 84 669.5 85 413.0 86 288.0 87 192.5 88 135.5 89 109.0 90 83.0 91 77.5 92 68.0 93 44.0 94 34.5 95 28.0 96 18.5 97 14.0 98 10.0 99 5.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.117575 2 0.069975 3 0.051675 4 0.04655 5 0.061950000000000005 6 0.1857 7 0.19737499999999997 8 0.239125 9 0.192525 10-14 0.125835 15-19 0.08093 20-24 0.07815 25-29 0.06425499999999999 30-34 0.10927 35-39 0.05521 40-44 0.041659999999999996 45-49 0.037165000000000004 50-54 0.058745 55-59 0.06684 60-64 3.9999999999999996E-5 65-69 4.4999999999999996E-5 70-74 0.0 75-79 0.0039 80-84 0.027575000000000002 85-89 7.500000000000001E-5 90-94 0.0 95-99 0.030529999999999998 100-101 0.0084375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2558324297585059 #Duplication Level Relative count 1 100.0 2 0.18034355447126776 3 0.002504771589878719 4 0.002504771589878719 5 0.0015028629539272315 6 5.009543179757438E-4 7 0.0 8 5.009543179757438E-4 9 0.0 10++ 0.003005725907854463 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 285815 3.2247374 3.8591397 60-64 TTTTT 275395 3.1536267 3.4652464 15-19 GATCG 1282645 3.0792136 4.23526 1 CGATC 1274500 3.073867 3.5621543 1 >>END_MODULE