FastQCFastQC Report
Thu 4 Oct 2012
002002_Airport_GTGGCC_L003_R1_012.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002002_Airport_GTGGCC_L003_R1_012.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 62

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 282505 3.267593 3.8449273 90-94
AAAAA 279790 3.188423 3.6353288 85-89
GATCG 1255735 3.020903 4.435845 1
CGATC 1229140 3.0100162 3.6081567 1
Produced by FastQC (version 0.10.0)