FastQCFastQC Report
Thu 4 Oct 2012
002002_Airport_GTGGCC_L003_R1_002.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002002_Airport_GTGGCC_L003_R1_002.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 62

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 280235 3.1322565 3.4926639 10-14
AAAAA 276920 3.0928204 3.4782546 1
GATCG 1279525 3.069283 4.325205 1
CGATC 1265290 3.0460966 3.336431 6
Produced by FastQC (version 0.10.0)