##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_L002_R2_010.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72511075 34.0 31.0 34.0 31.0 34.0 2 32.8832645 34.0 33.0 34.0 31.0 34.0 3 32.93016625 34.0 33.0 34.0 31.0 34.0 4 36.277543 37.0 37.0 37.0 35.0 37.0 5 36.28223175 37.0 37.0 37.0 35.0 37.0 6 36.2799025 37.0 37.0 37.0 35.0 37.0 7 36.26101425 37.0 37.0 37.0 35.0 37.0 8 36.22054225 37.0 37.0 37.0 35.0 37.0 9 37.99786975 39.0 39.0 39.0 37.0 39.0 10-14 38.261938 39.4 39.2 39.4 37.0 39.4 15-19 39.157806300000004 41.0 39.8 41.0 36.4 41.0 20-24 38.44771969999999 40.4 38.4 41.0 33.8 41.0 25-29 38.706663750000004 40.0 38.2 41.0 35.0 41.0 30-34 38.11894545 40.0 37.2 41.0 34.2 41.0 35-39 36.87494795 38.6 35.0 40.8 32.2 41.0 40-44 35.99166355 36.4 35.0 40.0 32.0 41.0 45-49 35.019106699999995 35.0 35.0 38.4 30.8 40.8 50-54 33.7634994 34.8 33.6 35.6 29.2 39.2 55-59 33.98911805 35.0 35.0 35.0 31.0 38.0 60-64 33.6321282 35.0 35.0 35.0 31.0 36.2 65-69 33.325587399999996 35.0 34.0 35.0 30.2 35.0 70-74 33.04555975 35.0 34.0 35.0 29.6 35.0 75-79 32.56047565 35.0 33.2 35.0 28.2 35.0 80-84 32.392832350000006 35.0 33.0 35.0 27.0 35.0 85-89 32.0835351 35.0 33.0 35.0 27.0 35.0 90-94 31.165260749999998 35.0 32.2 35.0 22.4 35.0 95-99 30.821622549999994 35.0 32.0 35.0 22.6 35.0 100-101 29.0266255 34.0 30.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8041.0 3 1201.0 4 1733.0 5 2130.0 6 2660.0 7 3121.0 8 3747.0 9 4211.0 10 4383.0 11 4739.0 12 4665.0 13 4891.0 14 4915.0 15 5070.0 16 5492.0 17 6275.0 18 7015.0 19 8129.0 20 9341.0 21 10930.0 22 13344.0 23 15995.0 24 19391.0 25 23338.0 26 28490.0 27 34589.0 28 42553.0 29 52902.0 30 66497.0 31 86947.0 32 118219.0 33 175292.0 34 320700.0 35 791318.0 36 1355892.0 37 621324.0 38 114608.0 39 15832.0 40 80.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.39035689601635 19.012601043743054 17.557846603828395 29.03919545641221 2 32.1679027332182 22.665451758349427 19.479547499234425 25.687098009197946 3 29.79394222792519 20.4060676849566 20.125653286445736 29.674336800672474 4 31.751236384750918 18.926622817555664 18.763415024827808 30.558725772865607 5 31.67889520940926 19.123373771483784 19.13118162032383 30.066549398783128 6 30.954940293712298 18.42042314348025 17.78087377056892 32.843762792238536 7 32.85612850179716 18.231502929827357 18.28425584588437 30.628112722491117 8 30.380654300067256 18.977908198602027 19.04669224150563 31.594745259825086 9 31.04406662657323 18.005075217773232 18.78346564083579 32.16739251481775 10-14 31.201264539033534 18.83959976949237 18.780361410540543 31.178774280933553 15-19 31.604529739423302 18.62586611496802 18.557990002088843 31.211614143519835 20-24 31.373970552002994 18.8293989712086 18.59565596395103 31.20097451283738 25-29 31.3206474162934 18.771272546579425 18.67556812960372 31.232511907523445 30-34 31.379969211981045 18.596180632252317 18.59928325427819 31.424566901488447 35-39 31.411271130655997 18.73143674503176 18.627930261543725 31.229361862768513 40-44 31.385093343870203 18.707672009084597 18.61188776155145 31.295346885493753 45-49 31.448481962194318 18.621303423677183 18.495635219043198 31.434579395085304 50-54 31.309757180767594 18.64281705110331 18.643787629616632 31.403638138512463 55-59 31.39754603688213 18.69381215862606 18.605928010632336 31.30271379385948 60-64 31.457661291532258 18.563028712605742 18.525468705093743 31.45384129076826 65-69 31.325981566299077 18.649100932455045 18.626220931311046 31.39869656993483 70-74 31.390645 18.706525 18.60664 31.296190000000003 75-79 31.54620042161507 18.606716169276265 18.504015063695537 31.343068345413133 80-84 31.346885069100374 18.66317324914382 18.629425503764732 31.360516177991077 85-89 31.44672 18.67766 18.58581 31.289810000000003 90-94 31.57584526067621 18.661614929291943 18.456289765031812 31.306250045000034 95-99 31.375803991485963 18.651382411332428 18.605565047156432 31.367248550025177 100-101 31.749819816609875 18.923187805163153 18.502574450276573 30.8244179279504 >>END_MODULE >>Per base GC content pass #Base %GC 1 63.42955235242855 2 57.85500074241615 3 59.46827902859766 4 62.309962157616525 5 61.74544460819239 6 63.798703085950834 7 63.484241224288276 8 61.97539955989234 9 63.21145914139098 10-14 62.38003881996709 15-19 62.816143882943145 20-24 62.57494506484037 25-29 62.55315932381686 30-34 62.80453611346949 35-39 62.64063299342452 40-44 62.68044022936395 45-49 62.88306135727962 50-54 62.71339531928005 55-59 62.7002598307416 60-64 62.911502582300514 65-69 62.724678136233905 70-74 62.686834999999995 75-79 62.88926876702819 80-84 62.707401247091454 85-89 62.73653 90-94 62.882095305676245 95-99 62.74305254151115 100-101 62.57423774456028 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 85.0 1 56.0 2 27.0 3 24.0 4 23.5 5 23.0 6 29.0 7 38.0 8 42.0 9 50.5 10 57.0 11 67.0 12 92.0 13 110.5 14 140.0 15 197.0 16 239.5 17 296.5 18 367.0 19 420.5 20 498.5 21 628.5 22 779.0 23 1005.0 24 1258.5 25 1480.5 26 1804.5 27 2174.5 28 2601.0 29 3123.0 30 3707.0 31 4450.0 32 5293.5 33 6101.0 34 6878.5 35 7791.0 36 8627.0 37 9381.5 38 10175.5 39 10901.5 40 11811.5 41 12848.0 42 13809.0 43 15140.0 44 17037.0 45 19408.0 46 22368.5 47 26041.0 48 30541.0 49 36061.0 50 42522.0 51 50177.0 52 58673.0 53 67698.5 54 77988.0 55 88371.5 56 98967.0 57 110326.5 58 121998.0 59 134238.0 60 146410.0 61 158575.5 62 171297.5 63 183214.5 64 193141.5 65 201422.0 66 206405.5 67 207530.0 68 204514.0 69 196994.0 70 184843.0 71 168350.5 72 148785.5 73 126848.0 74 103925.5 75 81382.0 76 60541.0 77 42082.0 78 27325.0 79 16798.5 80 9640.0 81 5167.0 82 2724.0 83 1519.5 84 941.5 85 647.5 86 465.5 87 333.5 88 247.5 89 201.0 90 160.5 91 131.0 92 109.0 93 88.0 94 61.5 95 47.5 96 42.5 97 29.0 98 19.5 99 9.5 100 2.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.167 2 0.15707500000000002 3 0.12995 4 0.11199999999999999 5 0.100525 6 0.08589999999999999 7 0.1477 8 0.194875 9 0.191475 10-14 0.090075 15-19 0.11213499999999998 20-24 0.052625000000000005 25-29 0.05163499999999999 30-34 0.08451 35-39 0.05457 40-44 0.046195 45-49 0.018465 50-54 0.059605 55-59 0.044545 60-64 1.9999999999999998E-5 65-69 4.9999999999999996E-6 70-74 0.0 75-79 0.005945 80-84 0.008135 85-89 0.0 90-94 7.999999999999999E-5 95-99 0.00516 100-101 0.0150625 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2902387850934174 #Duplication Level Relative count 1 100.0 2 0.18787669276900185 3 0.0015030135421520148 4 5.010045140506716E-4 5 0.0 6 0.0010020090281013432 7 5.010045140506716E-4 8 0.0010020090281013432 9 5.010045140506716E-4 10++ 0.008016072224810745 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 308250 3.4439576 3.9759989 1 TTTTT 287325 3.3185494 3.6094449 95-97 GATCG 1281495 3.0721314 4.1411066 1 CGATC 1265445 3.0555673 3.473504 1 >>END_MODULE