##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_L002_R1_009.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.580744 34.0 31.0 34.0 31.0 34.0 2 32.837575 34.0 31.0 34.0 31.0 34.0 3 32.80495125 34.0 31.0 34.0 31.0 34.0 4 36.312567 37.0 37.0 37.0 35.0 37.0 5 36.2439235 37.0 37.0 37.0 35.0 37.0 6 36.23076325 37.0 37.0 37.0 35.0 37.0 7 36.23356425 37.0 37.0 37.0 35.0 37.0 8 36.11961875 37.0 37.0 37.0 35.0 37.0 9 37.95932475 39.0 38.0 39.0 35.0 39.0 10-14 38.215776 39.4 38.2 39.4 35.2 39.4 15-19 38.86907805 40.0 38.6 41.0 34.8 41.0 20-24 38.97640055 40.4 38.8 41.0 35.2 41.0 25-29 37.915719 40.0 37.4 41.0 32.6 41.0 30-34 35.841455700000004 39.0 34.8 40.8 25.8 41.0 35-39 35.670633300000006 37.8 34.4 40.0 28.2 41.0 40-44 32.86434015 35.4 31.2 39.2 18.6 41.0 45-49 33.76887595 35.0 32.6 37.6 26.4 40.6 50-54 33.6374991 35.0 33.2 35.8 27.8 39.4 55-59 32.27822285 35.0 32.8 35.0 23.4 37.2 60-64 32.96592125 35.0 33.0 35.0 27.0 35.8 65-69 32.6709857 35.0 33.0 35.0 27.8 35.0 70-74 31.79398605 35.0 32.8 35.0 24.4 35.0 75-79 31.36244095 34.4 32.0 35.0 23.6 35.0 80-84 31.590044799999998 35.0 32.4 35.0 24.4 35.0 85-89 31.67091185 35.0 33.0 35.0 24.8 35.0 90-94 31.261107199999998 35.0 33.0 35.0 24.0 35.0 95-99 29.741966400000003 34.6 30.6 35.0 12.4 35.0 100-101 28.261829499999997 33.5 28.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 72.0 3 30.0 4 60.0 5 183.0 6 490.0 7 1451.0 8 3517.0 9 5808.0 10 7197.0 11 8120.0 12 8234.0 13 7808.0 14 7776.0 15 8187.0 16 8393.0 17 8855.0 18 9872.0 19 10974.0 20 12042.0 21 13594.0 22 16177.0 23 20137.0 24 25930.0 25 32783.0 26 42333.0 27 52885.0 28 66995.0 29 84918.0 30 111804.0 31 154034.0 32 224967.0 33 333337.0 34 479516.0 35 728101.0 36 1007851.0 37 417043.0 38 71118.0 39 7384.0 40 24.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.57346623388965 19.198945731161444 18.07543423573011 28.152153799218798 2 31.405450000000002 22.4904 20.474425 25.629724999999997 3 29.371750000000002 20.544875 20.9877 29.095675 4 31.261149999999997 19.47615 19.538 29.7247 5 31.410125 19.238475 19.35815 29.99325 6 30.761625 18.596275000000002 18.107225 32.534875 7 32.625025 18.573275 18.439575 30.362125000000002 8 30.385875000000002 19.059725 19.189 31.365399999999998 9 30.88515 18.078174999999998 19.0702 31.966475 10-14 31.060646553032328 18.92155094607755 18.946035947301798 31.071766553588326 15-19 31.2444 18.57998 18.733620000000002 31.441999999999997 20-24 31.293163380532963 18.70259153286727 18.78368318713702 31.22056189946275 25-29 31.81120766128216 18.752963562117785 18.634663587603857 30.801165188996197 30-34 32.343535612027665 18.492725678842927 18.2384791149034 30.925259594226006 35-39 31.69404050355304 18.739015928188795 18.614602505942482 30.952341062315686 40-44 32.847103789691076 18.593770717415143 18.23287239457026 30.326253098323512 45-49 31.60598 18.695795 18.544375 31.15385 50-54 31.477269068176696 18.705316187442662 18.638351093691533 31.17906365068911 55-59 31.469910000000002 18.9358 18.61148 30.98281 60-64 31.390563503662484 18.567266507627853 18.597220051132048 31.444949937577615 65-69 31.31553450392944 18.667564012120263 18.669349168857025 31.347552315093264 70-74 31.54452 18.880625000000002 18.5912 30.983655 75-79 31.438155000000002 18.64656 18.58727 31.328014999999997 80-84 31.322141854674513 18.64415050880956 18.676050638005083 31.357656998510848 85-89 31.42958421420789 18.688541607756267 18.620701828443813 31.26117234959203 90-94 31.48427472488951 18.539961011793125 18.551697579211705 31.42406668410566 95-99 31.349674346571888 18.67754823101246 18.717608345183784 31.25516907723187 100-101 31.647837499999998 18.670225 18.5545875 31.12735 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.72562003310844 2 57.035175 3 58.46742499999999 4 60.98585 5 61.403375000000004 6 63.2965 7 62.98715 8 61.75127500000001 9 62.851625 10-14 62.13241310662065 15-19 62.6864 20-24 62.51372527999571 25-29 62.612372850278355 30-34 63.26879520625367 35-39 62.64638156586872 40-44 63.173356888014595 45-49 62.75983000000001 50-54 62.656332718865805 55-59 62.45271999999999 60-64 62.835513441240096 65-69 62.66308681902271 70-74 62.528175 75-79 62.76617 80-84 62.67979885318535 85-89 62.69075656379992 90-94 62.90834140899517 95-99 62.60484342380376 100-101 62.775187499999994 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7.0 1 9.5 2 7.5 3 7.0 4 8.5 5 6.0 6 9.0 7 13.5 8 18.5 9 25.5 10 37.0 11 41.5 12 52.0 13 66.5 14 84.5 15 131.0 16 159.5 17 191.5 18 239.0 19 311.5 20 409.5 21 524.0 22 655.5 23 773.5 24 957.0 25 1239.5 26 1535.5 27 1886.5 28 2408.0 29 2952.0 30 3465.5 31 4123.5 32 4968.5 33 5831.5 34 6708.0 35 7560.0 36 8306.0 37 9312.0 38 10243.5 39 11036.5 40 11947.0 41 12886.0 42 14032.0 43 15461.5 44 17258.0 45 19460.0 46 22434.5 47 26223.0 48 30804.5 49 36519.5 50 43412.0 51 51003.5 52 59638.0 53 69538.0 54 80061.0 55 90640.0 56 101384.0 57 113086.0 58 125024.0 59 136565.0 60 148794.0 61 161891.0 62 174786.5 63 186401.0 64 195972.5 65 203041.0 66 207110.5 67 207478.0 68 203884.5 69 195852.0 70 182577.0 71 165221.5 72 144804.5 73 122412.0 74 99469.5 75 77285.5 76 56954.0 77 39493.5 78 25875.5 79 15801.0 80 8975.0 81 4926.5 82 2734.0 83 1540.5 84 934.0 85 626.0 86 451.0 87 325.5 88 220.0 89 155.5 90 111.0 91 84.0 92 50.0 93 24.5 94 15.0 95 10.5 96 8.5 97 5.5 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.025500000000000002 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 4.9999999999999996E-6 15-19 0.0 20-24 0.00204 25-29 0.0042049999999999995 30-34 0.04978 35-39 0.022845 40-44 1.42653 45-49 0.0 50-54 1.4E-4 55-59 0.0 60-64 0.01183 65-69 0.008780000000000001 70-74 0.0 75-79 0.0 80-84 4.0500000000000003E-4 85-89 0.007045000000000001 90-94 0.013354999999999999 95-99 2.85E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.06249562530622352 #Duplication Level Relative count 1 100.0 2 0.05252915368029256 3 5.002776540980244E-4 4 5.002776540980244E-4 5 0.0 6 0.0010005553081960487 7 0.0 8 0.0 9 0.0 10++ 0.0010005553081960487 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 287415 3.2828417 3.8185666 85-89 AAAAA 288650 3.2203162 3.8334353 1 CGATC 1234340 3.0027874 3.5187473 1 >>END_MODULE