FastQCFastQC Report
Thu 4 Oct 2012
002002_Airport_GTGGCC_L002_R1_007.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002002_Airport_GTGGCC_L002_R1_007.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 62

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 290265 3.263249 3.582225 65-69
TTTTT 287000 3.2403905 3.6977751 95-97
GATCG 1278150 3.0615554 4.3043118 1
CGATC 1264420 3.050501 3.4589114 1
Produced by FastQC (version 0.10.0)